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Bioinformatician/Data Engineer (f/m/d)

Your tasks and responsibilities:

  • Develop, standardize and execute data processing pipelines (ETL) for biomedical data
  • Taking on the role of a data steward, ensuring that all data activities are documented and follow the highest quality and cyber security standards
  • Work together with IT team to automate ETL processes
  • Work with existing relational databases and object stores (on-prem and cloud)
  • Improve existing in-house web applications for data access and visualization for both in-house as well as scientific and industry partners
  • Contribute to in-house python-based feature extraction pipelines for raw laboratory output (e.g. microscope images) together with data scientists
  • Work together with laboratory scientists

 

Expected skills and abilities:

  • You have an MSc (with at least 3 years of working experience in the area) in bioinformatics, or related fields
  • You are experienced with python and R for ETL and data analysis
  • You have experience with the Linux command line
  • You have hands-on experience with relational databases, in particular MySQL
  • Optional plus: First hands-on experience with Docker
  • Optional plus: Experience with python for data visualization and web development

Expected soft-skills:

  • Precise and reliable working: you have strong focus on delivering precise results according to specifications, including documentation of your work and delivering on time
  • Independent and pro-active working style
  • Good listening, communication, and personal skills to cooperate with lab colleagues
  • Very good command of English, written and spoken

Optional and beneficial skills include experience with:

  • Collaborative working tools (git, ticketing systems)
  • Experience with biomedical data (e.g., pathology images, flow cytometry, NGS, metabolomics, microbiome, …)
  • Experience with image analysis and computer vision (including machine learning and conventional methods)
  • Working in an ISO certified environment
  • German language skills are a plus, but not required to thrive in this position

 

What we offer:

  • Flexible workhours with possibility of home office
  • Family-friendly environment
  • Jobticket
  • You will have the opportunity to work in an internationally connected company, within a young, dynamic, and international team
  • Your work on improving and maintaining our data pipelines will directly impact patient well-being, both in the short-term through drug screening approaches and in the long-term through state-of-the-art biomarker research
  • Opportunity to learn new tools and shape your own work experience by using the technology and tools of your choice
  • We offer an unlimited contract with a minimum annual salary from € 58 000 gross based on 40 hours/week. Overpayment is possible, depending on qualifications and work experience.
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